python3: update 3.12.6 -> 3.13.0

License-update: copyright years

Update 0001-Makefile.pre-use-qemu-wrapper-when-gathering-profile.patch
to only include tests that do not fail under qemu (following upstream
change that also no longer obscures failures).

Drop
0001-gh-107811-tarfile-treat-overflow-in-UID-GID-as-failu.patch
(backport)
0001-python3-use-cc_basename-to-replace-CC-for-checking-c.patch
(fixed upstream)
0020-configure.ac-setup.py-do-not-add-a-curses-include-pa.patch
(code completely rewritten upstream)
cgi_py.patch
(cgi and cgitb modules removed upstream)

Add fix-armv5.patch
(address armv5 crashes)

Modules removed in 3.13 (look for 'important removals'):
https://docs.python.org/3/whatsnew/3.13.html
Manifest updated accordingly.

Add an explicit dependency on libatomic (needed on mips
and ppc), as upstream has explicitly switched it off
in cross builds. It's a no-op on other targets.

Fcntl relocated to python3-core by the manifest script.

(From OE-Core rev: 0b49c9aa31279ecda565cc66b63d1d61723b37b8)

Signed-off-by: Alexander Kanavin <alex@linutronix.de>
Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>

meta/recipes-devtools/python/python3/0001-Update-test_sysconfig-for-posix_user-purelib.patch

@@ -1,4 +1,4 @@
-From 37d058e841ba3bd89b5746cc5381afb014b11581 Mon Sep 17 00:00:00 2001
+From 5bf5aa6eae1fa3eed66893e51a1858ab481426b4 Mon Sep 17 00:00:00 2001
 From: Wentao Zhang <wentao.zhang@windriver.com>
 Date: Mon, 20 Mar 2023 13:39:52 +0800
 Subject: [PATCH] Update test_sysconfig for posix_user purelib
@@ -17,16 +17,15 @@ Update test_sysconfig.test_user_similar() for the posix_user scheme:
 
 Upstream-Status: Inappropriate [oe-core specific]
 Signed-off-by: Wentao Zhang <wentao.zhang@windriver.com>
-
 ---
  Lib/test/test_sysconfig.py | 2 +-
  1 file changed, 1 insertion(+), 1 deletion(-)
 
 diff --git a/Lib/test/test_sysconfig.py b/Lib/test/test_sysconfig.py
-index b6dbf3d..5672590 100644
+index 1ade492..4e94889 100644
 --- a/Lib/test/test_sysconfig.py
 +++ b/Lib/test/test_sysconfig.py
-@@ -372,7 +372,7 @@ class TestSysConfig(unittest.TestCase):
+@@ -414,7 +414,7 @@ class TestSysConfig(unittest.TestCase):
                  expected = os.path.normpath(global_path.replace(base, user, 1))
                  # bpo-44860: platlib of posix_user doesn't use sys.platlibdir,
                  # whereas posix_prefix does.
@@ -34,4 +33,4 @@ index b6dbf3d..5672590 100644
 +                if name == 'platlib' or name == 'purelib':
                      # Replace "/lib64/python3.11/site-packages" suffix
                      # with "/lib/python3.11/site-packages".
-                     py_version_short = sysconfig.get_python_version()
+                     py_version_abi = sysconfig._get_python_version_abi()